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1

AlphaFold at CASP13

AlQuraishi, Mohammed, Valencia, Alfonso

Journal:

Year:

2019

Language:

english

File:

PDF, 223 KB

english, 2019

2

DeepSol: A Deep Learning Framework for Sequence-Based Protein Solubility Prediction

Khurana, Sameer, Rawi, Reda, Kunji, Khalid, Chuang, Gwo-Yu, Bensmail, Halima, Mall, Raghvendra, Valencia, Alfonso

Journal:

Year:

2018

Language:

english

File:

PDF, 1.23 MB

english, 2018

3

sbgntikz – a TikZ library to draw SBGN maps

Rougny, Adrien, Valencia, Alfonso

Journal:

Year:

2019

Language:

english

File:

PDF, 281 KB

english, 2019

4

Development of new lubricating grease formulations using recycled LDPE as rheology modifier additive

J.E. Martín-Alfonso, C. Valencia, M.C. Sánchez, J.M. Franco, C. Gallegos

Journal:

European Polymer Journal

Year:

2007

Language:

english

File:

PDF, 1.38 MB

english, 2007

5

Challenges of the English Teacher in the Engineering Faculty

Astrid, Ramirez Valencia, Isabel, Borja-Alarcon, Alfonso, Lopez-Vega

Journal:

English Language Teaching

Year:

2018

Language:

english

File:

PDF, 160 KB

english, 2018

6

LogoJS: a Javascript package for creating sequence logos and embedding them in web applications

Pratt, Henry, Weng, Zhiping, Valencia, Alfonso

Journal:

Year:

2020

Language:

english

File:

PDF, 263 KB

english, 2020

7

Deep convolutional networks for quality assessment of protein folds

Derevyanko, Georgy, Grudinin, Sergei, Bengio, Yoshua, Lamoureux, Guillaume, Valencia, Alfonso

Journal:

Year:

2018

Language:

english

File:

PDF, 38.86 MB

english, 2018

8

Study of the Improvement on Energy Efficiency for a Building in the Mediterranean Area by the Installation of a Green Roof System

PeÃ±alvo-LÃ³pez, Elisa, CÃ¡rcel-Carrasco, Javier, Alfonso-Solar, David, Valencia-Salazar, IvÃ¡n, Hurtado-PÃ©rez, Elias

Journal:

Year:

2020

Language:

english

File:

PDF, 6.81 MB

english, 2020

9

Sequoya: Multi-objective multiple sequence alignment in Python

BenÃtez-Hidalgo, Antonio, Nebro, Antonio J, Montes, JosÃ© F Aldana, Valencia, Alfonso

Journal:

Year:

2020

File:

PDF, 706 KB

2020

10

Formulation and processing of virgin and recycled polyolefin/oil blends for the development of lubricating greases

J.E. Martín-Alfonso, A. Romero, C. Valencia, J.M. Franco

Journal:

Journal of Industrial & Engineering Chemistry

Year:

2013

Language:

english

File:

PDF, 838 KB

english, 2013

11

Emerging methods in protein co-evolution

de Juan, David, Pazos, Florencio, Valencia, Alfonso

Journal:

Nature Reviews Genetics

Year:

2013

Language:

english

File:

PDF, 839 KB

english, 2013

12

Influencia de la hormona de crecimiento en el perfil de la presión arterial. Resultados en pacientes adultos con déficit de dicha hormona

Climent Payá, Vicente, Marín Ortuño, Francisco, Gabriel Martínez Martínez, Juan, Antonio Quiles Llorens, Juan, Sogorb Garri, Francisco, Valencia Valencia, Pilar, Picó Alfonso, Antonio M., García de Bu

Journal:

Revista Española de Cardiología

Year:

2001

File:

PDF, 67 KB

2001

13

Clinical and economic benefits of integrated pump/CGM technology therapy in patients with type 1 diabetes in Colombia

Gomez, Ana Maria, Alfonso-Cristancho, Rafael, Orozco, John Jairo, Lynch, Peter Matthew, Prieto, Diana, Saunders, Rhodri, Roze, Stephane, Valencia, Juan Esteban

Journal:

Endocrinología y Nutrición (English Edition)

Year:

2016

Language:

english

File:

PDF, 976 KB

english, 2016

14

anexVis: Visual analytics framework for analysis of RNA expression

Tran, Diem-Trang, Zhang, Tian, Stutsman, Ryan, Might, Matthew, Desai, Umesh R, Kuberan, Balagurunathan, Valencia, Alfonso

Journal:

Year:

2018

Language:

english

File:

PDF, 75 KB

english, 2018

15

pyBedGraph: a python package for fast operations on 1D genomic signal tracks

Zhang, Henry B, Kim, Minji, Chuang, Jeffrey H, Ruan, Yijun, Valencia, Alfonso

Journal:

Year:

2020

File:

PDF, 959 KB

2020

16

A cautionary tale on using imputation methods for inference in matched-pairs design

Ramosaj, Burim, Amro, Lubna, Pauly, Markus, Valencia, Alfonso

Journal:

Year:

2020

File:

PDF, 765 KB

2020

17

p23 and HSP20/α-crystallin proteins define a conserved sequence domain present in other eukaryotic protein families

J.A Garcia-Ranea, Gladys Mirey, Jacques Camonis, Alfonso Valencia

Journal:

Year:

2002

Language:

english

File:

PDF, 746 KB

english, 2002

18

Preparation and Characterization of Gel-like Dispersions Based on Cellulosic Pulps and Castor Oil for Lubricant Applications

Núñez, N., Martín-Alfonso, J. E., Eugenio, M. E., Valencia, C., Díaz, M. J., Franco, J. M.

Journal:

Industrial & Engineering Chemistry Research

Year:

2011

Language:

english

File:

PDF, 3.67 MB

english, 2011

19

A module of the DnaJ heat shock proteins found in malaria parasites

Bork, Peer, Sander, Chris, Valencia, Alfonso, Bukau, Bernd

Journal:

Trends in Biochemical Sciences

Year:

1992

Language:

english

File:

PDF, 134 KB

english, 1992

20

Correction to “Analyzing the First Drafts of the Human Proteome”

Ezkurdia, Iakes, Vázquez, Jesús, Valencia, Alfonso, Tress, Michael

Journal:

Journal of Proteome Research

Year:

2015

File:

PDF, 113 KB

2015

21

Equilibrio ácido-base: el mejor enfoque clínico

Aristizábal-Salazar, Raúl E., Calvo-Torres, L. Felipe, Valencia-Arango, Luis Alfonso, Montoya-Cañon, Mauricio, Barbosa-Gantiva, Oscar, Hincapié-Baena, Vanessa

Journal:

Revista Colombiana de Anestesiología

Year:

2015

File:

PDF, 743 KB

2015

22

Information Retrieval and Text Mining Technologies for Chemistry

Krallinger, Martin, Rabal, Obdulia, Lourenço, Anália, Oyarzabal, Julen, Valencia, Alfonso

Journal:

Chemical Reviews

Year:

2017

Language:

english

File:

PDF, 11.00 MB

english, 2017

23

Updating the 97% identity threshold for 16S‌ ribosomal RNA OTUs

Edgar, Robert C, Valencia, Alfonso

Journal:

Year:

2018

Language:

english

File:

PDF, 423 KB

english, 2018

24

Effect of an alkali treatment on the development of cellulose pulp-based gel-like dispersions in vegetable oil for use as lubricants

Martín-Alfonso, J.E., López-Beltrán, F., Valencia, C., Franco, J.M.

Journal:

Tribology International

Year:

2018

Language:

english

File:

PDF, 1.55 MB

english, 2018

25

NMRNet: A deep learning approach to automated peak picking of protein NMR spectra

Klukowski, Piotr, Augoff, Michał, Zięba, Maciej, Drwal, Maciej, Gonczarek, Adam, Walczak, Michał J, Valencia, Alfonso

Journal:

Year:

2018

Language:

english

File:

PDF, 2.47 MB

english, 2018

26

REStLESS: Automated Translation of Glycan Sequences from Residue-Based Notation to SMILES and Atomic Coordinates

Chernyshov, Ivan Yu, Toukach, Philip V, Valencia, Alfonso

Journal:

Year:

2018

Language:

english

File:

PDF, 152 KB

english, 2018

27

SPECTRE: a suite of phylogenetic tools for reticulate evolution

Bastkowski, Sarah, Mapleson, Daniel, Spillner, Andreas, Wu, Taoyang, Balvočiūtė, Monika, Moulton, Vincent, Valencia, Alfonso

Journal:

Year:

2018

Language:

english

File:

PDF, 164 KB

english, 2018

28

The Impact of Maternal Diet during Pregnancy and Lactation on the Fatty Acid Composition of Erythrocytes and Breast Milk of Chilean Women

Barrera, Cynthia, Valenzuela, Rodrigo, Chamorro, Rodrigo, Bascuñán, Karla, Sandoval, Jorge, Sabag, Natalia, Valenzuela, Francesca, Valencia, María-Paz, Puigrredon, Claudia, Valenzuela, Alfonso

Journal:

Year:

2018

Language:

english

File:

PDF, 288 KB

english, 2018

29

Random Walk with Restart on Multiplex and Heterogeneous Biological Networks

Valdeolivas, Alberto, Tichit, Laurent, Navarro, Claire, Perrin, Sophie, Odelin, Gaëlle, Levy, Nicolas, Cau, Pierre, Remy, Elisabeth, Baudot, Anaïs, Valencia, Alfonso

Journal:

Year:

2018

Language:

english

File:

PDF, 1.53 MB

english, 2018

30

Parkour LIMS: facilitating high-quality sample preparation in next generation

Anatskiy, E, Ryan, D P, Grüning, B, Arrigoni, L, Manke, T, Bönisch, U, Valencia, Alfonso

Journal:

Year:

2018

Language:

english

File:

PDF, 257 KB

english, 2018

31

farPPI: a webserver for accurate prediction of protein-ligand binding structures for small-molecule PPI inhibitors by MM/PB(GB)SA methods

Wang, Zhe, Wang, Xuwen, Li, Youyong, Lei, Tailong, Wang, Ercheng, Li, Dan, Kang, Yu, Zhu, Feng, Hou, Tingjun, Valencia, Alfonso

Journal:

Year:

2018

Language:

english

File:

PDF, 174 KB

english, 2018

32

Características poblacionales y factores asociados a embarazo en mujeres adolescentes de Tuluá, Colombia

Sánchez Valencia, Yessica Alexandra, Mendoza Tascón, Luis Alfonso, Grisales López, Mónica Beatriz, Ceballos Molina, Leidy Yohanna, Bustamente Farfan, Johanna Catalina, Castañeda, Edgar Muriel, Chaverr

Journal:

Revista chilena de obstetricia y ginecología

Year:

2013

File:

PDF, 1.20 MB

2013

33

GEMPROT: visualization of the impact on the protein of the genetic variants found on each haplotype

Cuppens, Tania, Ludwig, Thomas E, Trouvé, Pascal, Genin, Emmanuelle, Valencia, Alfonso

Journal:

Year:

2018

Language:

english

File:

PDF, 256 KB

english, 2018

34

SENSE: Siamese neural network for sequence embedding and alignment-free comparison

Zheng, Wei, Yang, Le, Genco, Robert J, Wactawski-Wende, Jean, Buck, Michael, Sun, Yijun, Valencia, Alfonso

Journal:

Year:

2018

Language:

english

File:

PDF, 1.26 MB

english, 2018

35

refineD: Improved protein structure refinement using machine learning based restrained relaxation

Bhattacharya, Debswapna, Valencia, Alfonso

Journal:

Year:

2019

File:

PDF, 611 KB

2019

36

Intronic CNVs and gene expression variation in human populations

Rigau, Maria, Juan, David, Valencia, Alfonso, Rico, Daniel, Semple, Colin

Journal:

Year:

2019

Language:

english

File:

PDF, 2.62 MB

english, 2019

37

Biomolecular Reaction & Interaction Dynamics Global Environment (BRIDGE)

Senapathi, Tharindu, Bray, Simon, Barnett, Christopher B., Grüning, Björn, Naidoo, Kevin J, Valencia, Alfonso

Journal:

Year:

2019

Language:

english

File:

PDF, 330 KB

english, 2019

38

RTNsurvival : An R/Bioconductor package for regulatory network survival analysis

Groeneveld, Clarice S, Chagas, Vinicius S, Jones, Steven J M, Robertson, A Gordon, Ponder, Bruce A J, Meyer, Kerstin B, Castro, Mauro A A, Valencia, Alfonso

Journal:

Year:

2019

Language:

english

File:

PDF, 546 KB

english, 2019

39

Develop machine learning based regression predictive models for engineering protein solubility

Han, Xi, Wang, Xiaonan, Zhou, Kang, Valencia, Alfonso

Journal:

Year:

2019

Language:

english

File:

PDF, 696 KB

english, 2019

40

FP2VEC: a new molecular featurizer for learning molecular properties

Jeon, Woosung, Kim, Dongsup, Valencia, Alfonso

Journal:

Year:

2019

Language:

english

File:

PDF, 334 KB

english, 2019

41

ReSimNet: Drug Response Similarity Prediction using Siamese Neural Networks

Jeon, Minji, Park, Donghyeon, Lee, Jinhyuk, Jeon, Hwisang, Ko, Miyoung, Kim, Sunkyu, Choi, Yonghwa, Tan, Aik-Choon, Kang, Jaewoo, Valencia, Alfonso

Journal:

Year:

2019

Language:

english

File:

PDF, 280 KB

english, 2019

42

Alternating contraction and extension in the Southern Central Andes (35°–37°S)

Fennell, Lucas M., Iannelli, Sofia B., Encinas, Alfonso, Naipauer, Maximiliano, Valencia, Victor, Folguera, Andrés

Journal:

American Journal of Science

Year:

2019

Language:

english

File:

PDF, 20.97 MB

english, 2019

43

Sequence tube maps: making graph genomes intuitive to commuters

Beyer, Wolfgang, Novak, Adam M, Hickey, Glenn, Chan, Jeffrey, Tan, Vanessa, Paten, Benedict, Zerbino, Daniel R, Valencia, Alfonso

Journal:

Year:

2019

Language:

english

File:

PDF, 245 KB

english, 2019

44

simurg: simulate bacterial pangenomes in R

Ferrés, Ignacio, Fresia, Pablo, Iraola, Gregorio, Valencia, Alfonso

Journal:

Year:

2019

Language:

english

File:

PDF, 242 KB

english, 2019

45

SOLart: a structure-based method to predict protein solubility and aggregation

Hou, Qingzhen, Kwasigroch, Jean-Marc, Rooman, Marianne, Pucci, Fabrizio, Valencia, Alfonso

Journal:

Year:

2019

Language:

english

File:

PDF, 1010 KB

english, 2019

46

CpGtools: A Python Package for DNA Methylation Analysis

Wei, Ting, Nie, Jinfu, Larson, Nicholas B, Ye, Zhenqing, Eckel Passow, Jeanette E, Robertson, Keith D, Kocher, Jean-Pierre A, Wang, Liguo, Valencia, Alfonso

Journal:

Year:

2019

File:

PDF, 452 KB

2019

47

Diffuse Alveolar Hemorrhage

Quintana, Jhon H., Aragón, Cristian C., Santos, Víctor-Alfonso, de las Salas, Alejandra, Tafúr, Raúl-Alejandro, Aguirre-Valencia, David, Cañas, Carlos A., Tobón, Gabriel J.

Journal:

JCR Journal of Clinical Rheumatology

Year:

2019

File:

PDF, 116 KB

2019

48

Fast Zero-Inflated Negative Binomial Mixed Modeling Approach for Analyzing Longitudinal Metagenomics Data

Zhang, Xinyan, Yi, Nengjun, Valencia, Alfonso

Journal:

Year:

2020

File:

PDF, 1.17 MB

2020

49

cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats

Balaur, Irina, Roy, Ludovic, Mazein, Alexander, Karaca, S Gökberk, Dogrusoz, Ugur, Barillot, Emmanuel, Zinovyev, Andrei, Valencia, Alfonso

Journal:

Year:

2020

File:

PDF, 248 KB

2020

50

BEM: Mining Coregulation Patterns in Transcriptomics via Boolean Matrix Factorization

Liang, Lifan, Zhu, Kunju, Lu, Songjian, Valencia, Alfonso

Journal:

Year:

2020

Language:

english

File:

PDF, 713 KB

english, 2020

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